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  5. Bradi1g26720

Bradi1g26720


Description : squamosa promoter binding protein-like 4


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g26720
Cluster HCCA clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
A4A49_19670 No alias squamosa promoter-binding-like protein 6 0.03 Orthogroups_2024-Update
At5g43270 No alias Squamosa promoter-binding-like protein 2... 0.02 Orthogroups_2024-Update
Bradi4g33770 No alias squamosa promoter binding protein-like 9 0.04 Orthogroups_2024-Update
Brara.E01026.1 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G00852.1 No alias SBP-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I03021.1 No alias SBP-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.17G080700 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.02 Orthogroups_2024-Update
LOC_Os01g69830 No alias OsSPL2 - SBP-box gene family member, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g49010 No alias OsSPL12 - SBP-box gene family member, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g30370 No alias OsSPL19 - SBP-box gene family member, expressed 0.02 Orthogroups_2024-Update
MA_92489g0010 No alias (at5g43270 : 145.0) member of the SPL (squamosa-promoter... 0.03 Orthogroups_2024-Update
Mp1g10020.1 No alias transcription factor (SBP) 0.02 Orthogroups_2024-Update
PSME_00047223-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00048069-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00053503-RA No alias (at1g02065 : 156.0) Encodes an SBP-box gene, a member of... 0.03 Orthogroups_2024-Update
Potri.014G057800 No alias squamosa promoter binding protein-like 10 0.03 Orthogroups_2024-Update
Pp1s252_40V6 No alias squamosa promoter-binding 0.04 Orthogroups_2024-Update
Pp1s337_53V6 No alias T7I23.32; squamosa promoter-binding protein-like 8... 0.02 Orthogroups_2024-Update
Seita.5G432500.1 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
Solyc05g012040 No alias Squamosa promoter binding protein 6b 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
InterPro domains Description Start Stop
IPR004333 SBP_dom 85 158
No external refs found!