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  5. Bradi1g26940

Bradi1g26940


Description : chromatin remodeling 4


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g26940
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
102849 No alias Homeotic gene regulator 0.03 Orthogroups_2024-Update
155996 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
177985 No alias chromatin remodeling factor CHD3 (PICKLE) 0.05 Orthogroups_2024-Update
440815 No alias chromatin remodeling 5 0.07 Orthogroups_2024-Update
AC235535.1_FG001 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
At2g13370 No alias Protein CHROMATIN REMODELING 5... 0.03 Orthogroups_2024-Update
At2g25170 No alias chromatin remodeling factor CHD3 (PICKLE)... 0.04 Orthogroups_2024-Update
At2g28290 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
At3g06400 No alias Chromatin-remodeling complex ATPase... 0.03 Orthogroups_2024-Update
At5g19310 No alias Probable ATP-dependent DNA helicase CHR23... 0.03 Orthogroups_2024-Update
At5g44800 No alias PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2] 0.03 Orthogroups_2024-Update
Cre03.g179300 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
Cre08.g377200 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Orthogroups_2024-Update
Cre09.g390000 No alias chromatin remodeling factor17 0.01 Orthogroups_2024-Update
Cre12.g508150 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
Cre12.g537671 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
GRMZM2G010342 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
GRMZM2G097289 No alias Homeotic gene regulator 0.02 Orthogroups_2024-Update
GRMZM2G316191 No alias chromatin remodeling 4 0.04 Orthogroups_2024-Update
GRMZM2G467799 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Glyma.02G281000 No alias chromatin remodeling 5 0.06 Orthogroups_2024-Update
Glyma.04G062400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.06 Orthogroups_2024-Update
Glyma.05G131500 No alias chromatin remodeling 4 0.05 Orthogroups_2024-Update
Glyma.06G063400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.06 Orthogroups_2024-Update
Glyma.07G252100 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 Orthogroups_2024-Update
Glyma.10G250500 No alias Homeotic gene regulator 0.05 Orthogroups_2024-Update
Glyma.11G004100 No alias Homeotic gene regulator 0.05 Orthogroups_2024-Update
Glyma.13G215900 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
Glyma.14G033600 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
Glyma.15G097000 No alias chromatin remodeling factor17 0.06 Orthogroups_2024-Update
Glyma.17G022300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 Orthogroups_2024-Update
HORVU2Hr1G022450.1 No alias component *(CHR5) of SAGA transcription co-activator... 0.04 Orthogroups_2024-Update
Kfl00125_0020 kfl00125_0020_v1.... (at2g13370 : 403.0) chromatin remodeling 5 (CHR5);... 0.01 Orthogroups_2024-Update
Kfl00590_0040 kfl00590_0040_v1.1 (at2g28290 : 922.0) Encodes a SWI2/SNF2-like protein in... 0.07 Orthogroups_2024-Update
LOC_Os06g08480 No alias CHD3-type chromatin-remodeling factor PICKLE, putative, expressed 0.03 Orthogroups_2024-Update
MA_10429361g0010 No alias (at2g13370 : 1371.0) chromatin remodeling 5 (CHR5);... 0.04 Orthogroups_2024-Update
MA_8990972g0010 No alias (at2g25170 : 180.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.03 Orthogroups_2024-Update
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.05 Orthogroups_2024-Update
Mp5g06580.2 No alias chromatin remodeling factor (Snf2) 0.03 Orthogroups_2024-Update
Mp8g17660.1 No alias chromatin remodeling factor (Snf2) 0.02 Orthogroups_2024-Update
PSME_00000429-RA No alias (at2g28290 : 480.0) Encodes a SWI2/SNF2-like protein in... 0.03 Orthogroups_2024-Update
PSME_00001593-RA No alias (at2g13370 : 1311.0) chromatin remodeling 5 (CHR5);... 0.03 Orthogroups_2024-Update
PSME_00009909-RA No alias (at2g25170 : 296.0) Encodes a SWI/SWF nuclear-localized... 0.05 Orthogroups_2024-Update
PSME_00015826-RA No alias (at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.04 Orthogroups_2024-Update
Potri.001G253400 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
Potri.010G020700 No alias Function unknown 0.04 Orthogroups_2024-Update
Pp1s235_76V6 No alias chromatin remodeling complex subunit 0.03 Orthogroups_2024-Update
Pp1s360_39V6 No alias syd atpase chromatin binding 0.05 Orthogroups_2024-Update
Pp1s93_123V6 No alias chromodomain-helicase-dna-binding protein 0.04 Orthogroups_2024-Update
Seita.2G320900.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.03 Orthogroups_2024-Update
Seita.2G419600.1 No alias component *(CHR5) of SAGA transcription co-activator... 0.06 Orthogroups_2024-Update
Seita.4G050000.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.03 Orthogroups_2024-Update
Seita.4G112400.1 No alias SMARCA component *(SYD/BRM/MINU) 0.02 Orthogroups_2024-Update
Seita.5G166800.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 Orthogroups_2024-Update
Sobic.002G308700.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.05 Orthogroups_2024-Update
Sobic.003G163200.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.04 Orthogroups_2024-Update
Sobic.010G065300.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.07 Orthogroups_2024-Update
Sobic.010G105200.1 No alias SMARCA component *(SYD/BRM/MINU) 0.05 Orthogroups_2024-Update
Solyc06g065730 No alias chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc08g029130 No alias chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Sopen01g029280 No alias SNF2 family N-terminal domain 0.03 Orthogroups_2024-Update
Sopen01g031470 No alias SNF2 family N-terminal domain 0.02 Orthogroups_2024-Update
evm.model.contig_4438.19 No alias (at3g06010 : 317.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.01 Orthogroups_2024-Update
evm.model.tig00000691.35 No alias (at3g06010 : 234.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.01 Orthogroups_2024-Update
evm.model.tig00000802.67 No alias (at3g06010 : 465.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.03 Orthogroups_2024-Update
evm.model.tig00000983.26 No alias (at2g13370 : 651.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
evm.model.tig00020960.24 No alias (at2g13370 : 202.0) chromatin remodeling 5 (CHR5);... 0.04 Orthogroups_2024-Update
evm.model.tig00021623.13 No alias (at2g25170 : 464.0) Encodes a SWI/SWF nuclear-localized... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005049 nuclear export signal receptor activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0019439 aromatic compound catabolic process IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
MF GO:0032947 protein-containing complex scaffold activity IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034655 nucleobase-containing compound catabolic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043044 ATP-dependent chromatin remodeling IEP Predicted GO
MF GO:0043138 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0043140 ATP-dependent 3'-5' DNA helicase activity IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0044270 cellular nitrogen compound catabolic process IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0046700 heterocycle catabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901361 organic cyclic compound catabolic process IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR023780 Chromo_domain 609 658
IPR000330 SNF2_N 712 987
IPR019787 Znf_PHD-finger 110 153
IPR001650 Helicase_C 1011 1124
IPR009463 DUF1087 1299 1345
No external refs found!