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  5. Bradi1g28260

Bradi1g28260


Description : Stabilizer of iron transporter SufD / Polynucleotidyl transferase


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g28260
Cluster HCCA clusters: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Brara.J01517.1 No alias siRNA-integrating factor *(AGO) 0.02 Orthogroups_2024-Update
HORVU7Hr1G107770.4 No alias siRNA-integrating factor *(AGO) 0.02 Orthogroups_2024-Update
LOC_Os06g39640 No alias PINHEAD, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00014451-RA No alias (at1g69440 : 623.0) Encodes ARGONAUTE7, a member of the... 0.02 Orthogroups_2024-Update
PSME_00027871-RA No alias (at1g48410 : 522.0) Encodes an RNA Slicer that... 0.03 Orthogroups_2024-Update
Potri.009G001500 No alias Argonaute family protein 0.02 Orthogroups_2024-Update
Potri.018G019500 No alias Argonaute family protein 0.02 Orthogroups_2024-Update
Sobic.001G153600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen02g018440 No alias Piwi domain 0.02 Orthogroups_2024-Update
Sopen12g002750 No alias Piwi domain 0.02 Orthogroups_2024-Update
evm.model.contig_2082.8 No alias (at1g48410 : 352.0) Encodes an RNA Slicer that... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR032474 Argonaute_N 170 304
IPR032472 ArgoL2 508 554
IPR032473 Argonaute_Mid_dom 564 616
IPR014811 ArgoL1 320 369
IPR003165 Piwi 659 961
IPR003100 PAZ_dom 390 499
No external refs found!