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  5. Sopen06g022620

Sopen06g022620


Description : Receptor family ligand binding region


Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g022620
Cluster HCCA clusters: Cluster_288

Target Alias Description ECC score Gene Family Method Actions
At1g05200 No alias Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3] 0.04 Orthogroups_2024-Update
Brara.G00725.1 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
Brara.H01149.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Glyma.06G233600 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
LOC_Os04g49570 No alias glutamate receptor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g06130 No alias glutamate receptor, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00010771-RA No alias (at1g42540 : 809.0) member of Putative ligand-gated ion... 0.04 Orthogroups_2024-Update
PSME_00020365-RA No alias (at2g29120 : 505.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
PSME_00021964-RA No alias (at1g05200 : 282.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
PSME_00026595-RA No alias (at1g42540 : 291.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00038557-RA No alias (at1g42540 : 140.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00050642-RA No alias (q7xp59|glr31_orysa : 567.0) Glutamate receptor 3.1... 0.03 Orthogroups_2024-Update
Potri.001G374300 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Potri.001G374600 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Potri.018G096500 No alias glutamate receptor 2.8 0.02 Orthogroups_2024-Update
Seita.1G346100.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Sobic.010G231100.2 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004970 ionotropic glutamate receptor activity IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001828 ANF_lig-bd_rcpt 5 356
IPR001638 Solute-binding_3/MltF_N 439 761
IPR001320 Iontro_rcpt 762 791
No external refs found!