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  5. Bradi1g32010

Bradi1g32010


Description : fibrillarin 1


Gene families : OG_42_0002666 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002666_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g32010
Cluster HCCA clusters: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
171051 No alias fibrillarin 2 0.07 Orthogroups_2024-Update
A4A49_36833 No alias mediator of rna polymerase ii transcription subunit 36a 0.03 Orthogroups_2024-Update
At4g25630 No alias Mediator of RNA polymerase II transcription subunit 36a... 0.03 Orthogroups_2024-Update
At5g52470 No alias Probable mediator of RNA polymerase II transcription... 0.04 Orthogroups_2024-Update
Brara.A01555.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.04 Orthogroups_2024-Update
Brara.H01568.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.05 Orthogroups_2024-Update
Brara.K00184.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.06 Orthogroups_2024-Update
GRMZM2G363678 No alias fibrillarin 1 0.02 Orthogroups_2024-Update
HORVU6Hr1G091860.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.04 Orthogroups_2024-Update
HORVU7Hr1G108780.2 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.09 Orthogroups_2024-Update
Kfl00029_0080 kfl00029_0080_v1.... (at4g25630 : 404.0) encodes a fibrillarin, a key... 0.03 Orthogroups_2024-Update
LOC_Os05g08360 No alias rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed 0.02 Orthogroups_2024-Update
Potri.015G147500 No alias fibrillarin 1 0.03 Orthogroups_2024-Update
Seita.1G370900.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.03 Orthogroups_2024-Update
Sobic.004G349700.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.02 Orthogroups_2024-Update
Sopen03g004100 No alias Fibrillarin 0.03 Orthogroups_2024-Update
evm.model.tig00001049.16 No alias (at5g52470 : 336.0) encodes a fibrillarin, a key... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
BP GO:0006364 rRNA processing IEA InterProScan predictions
MF GO:0008168 methyltransferase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004549 tRNA-specific ribonuclease activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000692 Fibrillarin 69 294
No external refs found!