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  5. Bradi1g32860

Bradi1g32860


Description : polyubiquitin 10


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g32860
Cluster HCCA clusters: Cluster_194

Target Alias Description ECC score Gene Family Method Actions
173723 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
228943 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
271419 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Cre09.g396400 No alias related to ubiquitin 1 0.01 Orthogroups_2024-Update
Cre12.g491400 No alias related to ubiquitin 1 0.01 Orthogroups_2024-Update
HORVU6Hr1G021700.4 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G026200.5 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G026280.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Kfl00037_0290 kfl00037_0290_v1.1 (at4g05320 : 880.0) One of five polyubiquitin genes in... 0.02 Orthogroups_2024-Update
MA_13121g0010 No alias (at5g03240 : 264.0) encodes ubiquitin that is attached... 0.03 Orthogroups_2024-Update
MA_14427g0010 No alias (at4g05050 : 393.0) polyubiquitin gene, belongs to a... 0.02 Orthogroups_2024-Update
Potri.005G011700 No alias ubiquitin 9 0.02 Orthogroups_2024-Update
Potri.014G115100 No alias ubiquitin 6 0.02 Orthogroups_2024-Update
Potri.017G135600 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Pp1s175_73V6 No alias polyubiquitin 0.02 Orthogroups_2024-Update
Pp1s351_6V6 No alias polyubiquitin containing 7 ubiquitin monomers 0.03 Orthogroups_2024-Update
Pp1s46_189V6 No alias polyubiquitin 0.03 Orthogroups_2024-Update
Seita.1G282500.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Seita.3G398300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.4G253400.1 No alias UBQ ubiquitin-fold protein 0.04 Orthogroups_2024-Update
Seita.4G259900.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Sobic.002G292500.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.004G050100.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
Sobic.010G239500.6 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Sopen06g018280 No alias Ribosomal L40e family 0.03 Orthogroups_2024-Update
evm.model.tig00000403.47 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006094 gluconeogenesis IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
BP GO:0009108 coenzyme biosynthetic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
BP GO:0019319 hexose biosynthetic process IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046364 monosaccharide biosynthetic process IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 74
IPR000626 Ubiquitin_dom 231 302
IPR000626 Ubiquitin_dom 79 150
IPR000626 Ubiquitin_dom 155 226
IPR000626 Ubiquitin_dom 307 378
No external refs found!