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  5. Sopen06g023080

Sopen06g023080


Description : PPR repeat


Gene families : OG_42_0008731 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008731_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g023080
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Bradi1g64080 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G476593 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G272000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
MA_10032819g0010 No alias (at4g02750 : 712.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_177540g0010 No alias (at4g02750 : 711.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00027758-RA No alias (at4g02750 : 721.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Seita.9G424600.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 395 442
IPR032867 DYW_dom 569 694
IPR002885 Pentatricopeptide_repeat 268 294
IPR002885 Pentatricopeptide_repeat 471 495
IPR002885 Pentatricopeptide_repeat 24 48
IPR002885 Pentatricopeptide_repeat 50 79
IPR002885 Pentatricopeptide_repeat 80 110
IPR002885 Pentatricopeptide_repeat 111 141
IPR002885 Pentatricopeptide_repeat 235 261
IPR002885 Pentatricopeptide_repeat 204 233
IPR002885 Pentatricopeptide_repeat 176 203
IPR002885 Pentatricopeptide_repeat 142 170
IPR002885 Pentatricopeptide_repeat 298 325
No external refs found!