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  5. Bradi1g35050

Bradi1g35050


Description : alpha-amylase-like


Gene families : OG_42_0000605 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000605_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g35050
Cluster HCCA clusters: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
HORVU7Hr1G091250.3 No alias alpha amylase 0.02 Orthogroups_2024-Update
LOC_Os08g36910 No alias alpha-amylase precursor, putative, expressed 0.04 Orthogroups_2024-Update
PSME_00011482-RA No alias (p27933|amy3d_orysa : 429.0) Alpha-amylase isozyme 3D... 0.02 Orthogroups_2024-Update
PSME_00021432-RA No alias (p27937|amy3b_orysa : 503.0) Alpha-amylase isozyme 3B... 0.02 Orthogroups_2024-Update
PSME_00049240-RA No alias (p27934|amy3e_orysa : 535.0) Alpha-amylase isozyme 3E... 0.04 Orthogroups_2024-Update
Seita.1G331000.1 No alias alpha amylase 0.03 Orthogroups_2024-Update
Solyc04g078930 No alias Alpha-amylase (AHRD V3.3 *** K4BUX7_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
MF GO:0004556 alpha-amylase activity IEA InterProScan predictions
MF GO:0005509 calcium ion binding IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR012850 A-amylase_bs_C 371 429
IPR006047 Glyco_hydro_13_cat_dom 52 213
No external refs found!