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  5. Bradi1g42940

Bradi1g42940


Description : RNA-binding CRS1 / YhbY (CRM) domain protein


Gene families : OG_42_0001255 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001255_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g42940
Cluster HCCA clusters: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Brara.H00504.1 No alias splicing factor *(CFM6/7) 0.03 Orthogroups_2024-Update
HORVU1Hr1G019580.2 No alias splicing factor *(CFM9) 0.03 Orthogroups_2024-Update
HORVU2Hr1G084980.5 No alias Unknown function 0.02 Orthogroups_2024-Update
MA_10436523g0010 No alias (at2g28480 : 231.0) RNA-binding CRS1 / YhbY (CRM) domain... 0.02 Orthogroups_2024-Update
PSME_00011512-RA No alias (at2g28480 : 233.0) RNA-binding CRS1 / YhbY (CRM) domain... 0.05 Orthogroups_2024-Update
Pp1s55_63V6 No alias unknow protein 0.03 Orthogroups_2024-Update
Seita.4G132500.1 No alias splicing factor *(CFM6/7) 0.06 Orthogroups_2024-Update
Solyc07g047900 No alias CRS1/YhbY (CRM) domain protein (AHRD V3.3 *** A0A072U6I9_MEDTR) 0.02 Orthogroups_2024-Update
Sopen12g006070 No alias CRS1 / YhbY (CRM) domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 170 254
No external refs found!