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  5. Bradi1g47160

Bradi1g47160


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g47160

Target Alias Description ECC score Gene Family Method Actions
130453 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
A4A49_25971 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
At1g14470 No alias Pentatricopeptide repeat-containing protein At1g14470... 0.03 Orthogroups_2024-Update
At2g33760 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.02 Orthogroups_2024-Update
At5g13230 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Orthogroups_2024-Update
Bradi1g12697 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g40131 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g59950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.A00474.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.A01120.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.C03980.1 No alias RNA editing factor *(MEF25) 0.04 Orthogroups_2024-Update
GRMZM2G168170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.02G250600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.05G026400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G206900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G196400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G172502 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
HORVU0Hr1G015630.5 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU3Hr1G115530.39 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G014730.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G047250.4 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU6Hr1G065970.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G069210.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g08120 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g15530 No alias tetratricopeptide-like helical, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g58330 No alias expressed protein 0.05 Orthogroups_2024-Update
LOC_Os03g62690 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g15800 No alias tetratricopeptide-like helical, putative, expressed 0.02 Orthogroups_2024-Update
MA_432641g0020 No alias (at1g20230 : 666.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_43615g0010 No alias (at1g11290 : 687.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_43727g0010 No alias (at3g02010 : 679.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00006211-RA No alias (at3g46790 : 145.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00056460-RA No alias (at4g21300 : 575.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Seita.2G247200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G006500.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.4G225800.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.8G017200.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.002G385200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G025100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G282000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G201400.1 No alias RNA editing factor *(DOT4) 0.05 Orthogroups_2024-Update
Solyc01g100800 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc02g079260 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc03g093630 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc05g023900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen01g038630 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen03g028590 No alias PPR repeat family 0.01 Orthogroups_2024-Update
Sopen11g003140 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen12g032510 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 662 786
IPR002885 Pentatricopeptide_repeat 260 283
IPR002885 Pentatricopeptide_repeat 563 586
IPR002885 Pentatricopeptide_repeat 390 434
IPR002885 Pentatricopeptide_repeat 487 534
IPR002885 Pentatricopeptide_repeat 285 329
No external refs found!