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  5. Bradi1g47580

Bradi1g47580


Description : RING/U-box superfamily protein


Gene families : OG_42_0003523 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003523_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g47580
Cluster HCCA clusters: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G096300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G201800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os02g55480 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_10274793g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_227599g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00001236-RA No alias (at2g15580 : 85.9) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 160 205
No external refs found!