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  5. Bradi1g51400

Bradi1g51400


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0008601 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008601_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g51400
Cluster HCCA clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
At2g35030 No alias Pentatricopeptide repeat-containing protein At2g35030,... 0.02 Orthogroups_2024-Update
Brara.E00931.1 No alias RNA editing factor *(COD1) 0.03 Orthogroups_2024-Update
MA_10428421g0010 No alias (at4g02750 : 749.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Seita.3G384600.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.008G163400.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.010G028700.2 No alias RNA editing factor *(COD1) 0.03 Orthogroups_2024-Update
Sopen04g010110 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 82 111
IPR002885 Pentatricopeptide_repeat 378 400
IPR002885 Pentatricopeptide_repeat 50 76
IPR002885 Pentatricopeptide_repeat 444 473
IPR002885 Pentatricopeptide_repeat 19 49
IPR002885 Pentatricopeptide_repeat 140 173
IPR002885 Pentatricopeptide_repeat 202 249
IPR002885 Pentatricopeptide_repeat 303 351
No external refs found!