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  5. Bradi1g56770

Bradi1g56770


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0011294 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0011294_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g56770
Cluster HCCA clusters: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G408379 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.2G042300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G042900.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 196 224
IPR002885 Pentatricopeptide_repeat 469 496
IPR002885 Pentatricopeptide_repeat 229 259
IPR002885 Pentatricopeptide_repeat 402 426
IPR002885 Pentatricopeptide_repeat 366 393
IPR002885 Pentatricopeptide_repeat 331 359
IPR002885 Pentatricopeptide_repeat 303 328
IPR032867 DYW_dom 502 625
No external refs found!