1. Home
  2. Species
  3. Brachypodium distachyon
  4. Sequence
  5. Bradi1g61220

Bradi1g61220


Description : RNA helicase family protein


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g61220
Cluster HCCA clusters: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
82212 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
A4A49_00699 No alias pre-mrna-splicing factor atp-dependent rna helicase deah7 0.04 Orthogroups_2024-Update
At1g32490 No alias ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5] 0.05 Orthogroups_2024-Update
At2g35340 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Orthogroups_2024-Update
At3g26560 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Orthogroups_2024-Update
At3g62310 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Orthogroups_2024-Update
At4g18465 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Orthogroups_2024-Update
Cre08.g358563 No alias ATP-dependent RNA helicase, putative 0.02 Orthogroups_2024-Update
Cre24.g755347 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
GRMZM2G029258 No alias ATP-dependent RNA helicase, putative 0.03 Orthogroups_2024-Update
Glyma.01G142700 No alias RNA helicase family protein 0.05 Orthogroups_2024-Update
Glyma.03G024000 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.05G146100 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.06G201700 No alias RNA helicase family protein 0.04 Orthogroups_2024-Update
Glyma.13G232900 No alias RNA helicase family protein 0.04 Orthogroups_2024-Update
Glyma.13G342400 No alias RNA helicase family protein 0.06 Orthogroups_2024-Update
Glyma.14G217400 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.15G031900 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.17G256200 No alias ATP-dependent RNA helicase, putative 0.03 Orthogroups_2024-Update
Kfl00020_0480 kfl00020_0480_v1.1 (at3g26560 : 1414.0) ATP-dependent RNA helicase,... 0.03 Orthogroups_2024-Update
Kfl00085_0100 kfl00085_0100_v1.1 (at1g32490 : 1214.0) Encodes a homolog of the yeast PRP2... 0.02 Orthogroups_2024-Update
Kfl00316_0150 kfl00316_0150_v1.1 (at5g13010 : 1240.0) embryo defective 3011 (EMB3011);... 0.01 Orthogroups_2024-Update
Kfl00433_0080 kfl00433_0080_v1.1 (at1g33390 : 423.0) Over-expression of this gene results... 0.03 Orthogroups_2024-Update
Kfl00502_0080 kfl00502_0080_v1.1 (at4g18465 : 521.0) RNA helicase family protein;... 0.01 Orthogroups_2024-Update
LOC_Os07g32430 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.04 Orthogroups_2024-Update
LOC_Os08g24760 No alias ATP-dependent RNA helicase, putative, expressed 0.03 Orthogroups_2024-Update
MA_629782g0010 No alias (at5g13010 : 617.0) embryo defective 3011 (EMB3011);... 0.03 Orthogroups_2024-Update
PSME_00016394-RA No alias (at3g26560 : 1512.0) ATP-dependent RNA helicase,... 0.04 Orthogroups_2024-Update
Potri.002G201400 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Potri.015G008700 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Pp1s89_224V6 No alias deah (asp-glu-ala-his) box polypeptide 8 0.01 Orthogroups_2024-Update
Seita.1G136100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.2G326100.1 No alias RNA helicase *(Prp16) 0.06 Orthogroups_2024-Update
Seita.3G152600.1 No alias RNA helicase *(Prp2) 0.04 Orthogroups_2024-Update
Seita.4G042700.1 No alias RNA helicase *(Prp22) 0.03 Orthogroups_2024-Update
Seita.8G109400.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.001G473000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G313400.1 No alias RNA helicase *(Prp16) 0.02 Orthogroups_2024-Update
Sobic.004G174200.1 No alias RNA helicase *(Prp2) 0.05 Orthogroups_2024-Update
Solyc07g039550 No alias RNA helicase DEAH-box21 0.03 Orthogroups_2024-Update
Solyc12g089010 No alias ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9SMB4_RICCO) 0.05 Orthogroups_2024-Update
Sopen01g053030 No alias Oligonucleotide/oligosaccharide-binding (OB)-fold 0.02 Orthogroups_2024-Update
evm.model.contig_2494.11 No alias (at3g62310 : 436.0) RNA helicase family protein;... 0.01 Orthogroups_2024-Update
evm.model.tig00000984.27 No alias (at1g32490 : 711.0) Encodes a homolog of the yeast PRP2... 0.01 Orthogroups_2024-Update
evm.model.tig00021589.29 No alias (at3g26560 : 868.0) ATP-dependent RNA helicase,... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
MF GO:0005049 nuclear export signal receptor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
MF GO:0043138 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0043140 ATP-dependent 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 803 877
IPR001650 Helicase_C 614 741
IPR011709 DUF1605 951 1028
No external refs found!