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  5. Bradi1g64050

Bradi1g64050


Description : sigma factor binding protein 1


Gene families : OG_42_0002624 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002624_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g64050
Cluster HCCA clusters: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
At2g41180 No alias Sigma factor binding protein 2, chloroplastic... 0.03 Orthogroups_2024-Update
Brara.C02105.1 No alias WRKY33-activating protein *(SIB) 0.03 Orthogroups_2024-Update
Brara.I03902.1 No alias WRKY33-activating protein *(SIB) 0.03 Orthogroups_2024-Update
Glyma.03G127800 No alias VQ motif-containing protein 0.04 Orthogroups_2024-Update
Glyma.15G232200 No alias sigma factor binding protein 1 0.02 Orthogroups_2024-Update
Glyma.19G130400 No alias VQ motif-containing protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G052320.1 No alias WRKY33-activating protein *(SIB) 0.04 Orthogroups_2024-Update
LOC_Os03g20330 No alias VQ domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Potri.001G029700 No alias sigma factor binding protein 1 0.06 Orthogroups_2024-Update
Potri.003G194700 No alias sigma factor binding protein 1 0.05 Orthogroups_2024-Update
Potri.016G036600 No alias sigma factor binding protein 1 0.02 Orthogroups_2024-Update
Sobic.001G390700.1 No alias WRKY33-activating protein *(SIB) 0.03 Orthogroups_2024-Update
Solyc01g096510 No alias LOW QUALITY:VQ motif-containing protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc10g078440 No alias LOW QUALITY:VQ motif family protein (AHRD V3.3 *-* B6TQH0_MAIZE) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR008889 VQ 39 65
No external refs found!