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  5. Sopen06g027000

Sopen06g027000


Description : PPR repeat family


Gene families : OG_42_0009879 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009879_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g027000
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Bradi4g30030 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
LOC_Os09g25050 No alias PPR repeat domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Seita.5G204300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G198900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc06g069700 No alias Pentatricopeptide repeat-containing protein, putative... 0.1 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 128 152
IPR002885 Pentatricopeptide_repeat 160 188
IPR002885 Pentatricopeptide_repeat 401 448
IPR002885 Pentatricopeptide_repeat 190 239
IPR002885 Pentatricopeptide_repeat 260 309
IPR002885 Pentatricopeptide_repeat 470 519
IPR002885 Pentatricopeptide_repeat 553 598
IPR002885 Pentatricopeptide_repeat 330 379
No external refs found!