Sopen06g027320

Description : Pectate lyase

Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g027320
Cluster	HCCA clusters: Cluster_212

Target	Alias	Description	ECC score	Gene Family Method
A4A49_12542	No alias	pectate lyase	0.02	Orthogroups_2024-Update
At3g54920	No alias	Probable pectate lyase 13...	0.02	Orthogroups_2024-Update
GRMZM2G323418	No alias	Pectate lyase family protein	0.01	Orthogroups_2024-Update
Glyma.18G012333	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
Sobic.003G322800.1	No alias	pectate lyase & EC_4.2 carbon-oxygen lyase	0.03	Orthogroups_2024-Update
Solyc02g067450	No alias	Pectate lyase (AHRD V3.3 *** M1A9L8_SOLTU)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	None	Extended
MF	GO:0030570	pectate lyase activity	IEA	InterProScan predictions

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007524	Pec_lyase_N	24	76
IPR002022	Pec_lyase	187	352

External Links

No external refs found!