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  5. Bradi1g68478

Bradi1g68478


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g68478
Cluster HCCA clusters: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
Bradi2g53140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Brara.J00664.1 No alias Unknown function 0.04 Orthogroups_2024-Update
MA_767209g0010 No alias (at3g49170 : 650.0) embryo defective 2261 (EMB2261);... 0.03 Orthogroups_2024-Update
PSME_00014882-RA No alias (at4g13650 : 307.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update
PSME_00017551-RA No alias (at4g18750 : 421.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00025245-RA No alias (at3g03580 : 656.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00038705-RA No alias (at3g23330 : 523.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00042901-RA No alias (at4g33170 : 526.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00051747-RA No alias (at1g11290 : 641.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Seita.9G473200.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.007G137800.3 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003896 DNA primase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 533 655
IPR002885 Pentatricopeptide_repeat 359 405
IPR002885 Pentatricopeptide_repeat 260 303
IPR002885 Pentatricopeptide_repeat 166 189
IPR002885 Pentatricopeptide_repeat 191 221
IPR002885 Pentatricopeptide_repeat 90 114
IPR002885 Pentatricopeptide_repeat 333 358
IPR002885 Pentatricopeptide_repeat 433 457
No external refs found!