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  5. Sopen06g028140

Sopen06g028140


Description : Zinc finger C-x8-C-x5-C-x3-H type (and similar)


Gene families : OG_42_0000464 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000464_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g028140
Cluster HCCA clusters: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
Brara.A03647.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Brara.F02222.1 No alias regulatory protein of RNA homeostasis 0.02 Orthogroups_2024-Update
Brara.J00317.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Glyma.15G095500 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Orthogroups_2024-Update
MA_10435385g0010 No alias (at5g16540 : 126.0) Encodes a zinc finger protein.; zinc... 0.03 Orthogroups_2024-Update
Seita.5G056200.1 No alias regulatory protein of RNA homeostasis 0.02 Orthogroups_2024-Update
Solyc01g067550 No alias Zinc finger transcription factor 8 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 307 329
IPR000571 Znf_CCCH 533 558
IPR000571 Znf_CCCH 350 374
IPR000571 Znf_CCCH 259 281
IPR000571 Znf_CCCH 486 511
No external refs found!