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  5. Bradi1g74560

Bradi1g74560


Description : evolutionarily conserved C-terminal region 2


Gene families : OG_42_0000396 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000396_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g74560
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
A4A49_17025 No alias 30-kda cleavage and polyadenylation specificity factor 30 0.02 Orthogroups_2024-Update
Bradi3g18190 No alias evolutionarily conserved C-terminal region 5 0.04 Orthogroups_2024-Update
Brara.E02771.1 No alias methylation reader *(ECT) 0.03 Orthogroups_2024-Update
GRMZM2G004997 No alias evolutionarily conserved C-terminal region 5 0.02 Orthogroups_2024-Update
Glyma.08G162200 No alias evolutionarily conserved C-terminal region 8 0.02 Orthogroups_2024-Update
Glyma.15G265400 No alias evolutionarily conserved C-terminal region 8 0.02 Orthogroups_2024-Update
Glyma.17G038400 No alias evolutionarily conserved C-terminal region 7 0.03 Orthogroups_2024-Update
HORVU4Hr1G052390.3 No alias methylation reader *(ECT) 0.03 Orthogroups_2024-Update
Kfl00101_0290 kfl00101_0290_v1.1 (at3g13060 : 203.0) evolutionarily conserved C-terminal... 0.02 Orthogroups_2024-Update
LOC_Os01g48790 No alias YT521-B-like family domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g06240 No alias YT521-B-like family domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_29812g0010 No alias (at1g48110 : 340.0) evolutionarily conserved C-terminal... 0.03 Orthogroups_2024-Update
PSME_00011787-RA No alias (at1g48110 : 346.0) evolutionarily conserved C-terminal... 0.03 Orthogroups_2024-Update
Potri.003G222700 No alias evolutionarily conserved C-terminal region 2 0.02 Orthogroups_2024-Update
Seita.3G070000.1 No alias methylation reader *(ECT) 0.03 Orthogroups_2024-Update
Seita.6G246600.1 No alias methylation reader *(ECT) 0.05 Orthogroups_2024-Update
Seita.9G534000.1 No alias methylation reader *(ECT) 0.03 Orthogroups_2024-Update
Sobic.009G004300.1 No alias methylation reader *(ECT) 0.03 Orthogroups_2024-Update
Solyc01g028860 No alias evolutionarily conserved C-terminal region 2 (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004181 metallocarboxypeptidase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007275 YTH_domain 482 619
No external refs found!