1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen06g029080

Sopen06g029080


Description : Sigma-70 region 3


Gene families : OG_42_0005642 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005642_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g029080
Cluster HCCA clusters: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
At1g64860 No alias RNA polymerase sigma factor sigA... 0.05 Orthogroups_2024-Update
Bradi3g16040 No alias sigma factor A 0.02 Orthogroups_2024-Update
Brara.B02567.1 No alias basal Sigma-type transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G543629 No alias sigma factor A 0.04 Orthogroups_2024-Update
GRMZM5G813933 No alias sigma factor A 0.02 Orthogroups_2024-Update
LOC_Os08g06630 No alias RNA polymerase sigma factor, putative, expressed 0.04 Orthogroups_2024-Update
Seita.6G049900.1 No alias basal Sigma-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.007G053800.1 No alias basal Sigma-type transcription factor 0.05 Orthogroups_2024-Update
Solyc06g072710 No alias Sigma factor (AHRD V3.3 *** Q9SLX3_TOBAC) 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006352 DNA-templated transcription, initiation IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007624 RNA_pol_sigma70_r3 345 416
IPR007627 RNA_pol_sigma70_r2 268 335
IPR007630 RNA_pol_sigma70_r4 442 491
No external refs found!