Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brachypodium release: Bradi2g03730 | |
Cluster | HCCA clusters: Cluster_25 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
78092 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
At4g02750 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | Orthogroups_2024-Update | |
Bradi4g33270 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Brara.E00983.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Brara.E03135.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.F03378.1 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
Brara.G02157.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Brara.H03086.1 | No alias | Unknown function | 0.09 | Orthogroups_2024-Update | |
Brara.J02108.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
GRMZM2G019689 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G020008 | No alias | mitochondrial RNAediting factor 1 | 0.03 | Orthogroups_2024-Update | |
GRMZM2G031588 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
GRMZM2G060337 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G073017 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G098869 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G144071 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G158839 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
GRMZM2G331779 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G430710 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G456114 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G474929 | No alias | mitochondrial editing factor 21 | 0.03 | Orthogroups_2024-Update | |
GRMZM5G862936 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.04G078800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.05G008800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.12G183600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
MA_136188g0010 | No alias | (at1g11290 : 582.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
MA_18383g0010 | No alias | (at1g11290 : 704.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
MA_22485g0010 | No alias | (at3g46790 : 552.0) Encodes a member of a PCMP (plant... | 0.04 | Orthogroups_2024-Update | |
MA_83898g0010 | No alias | (at1g11290 : 636.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
MA_89214g0010 | No alias | (at1g11290 : 690.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
PSME_00004138-RA | No alias | (at1g11290 : 633.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00006334-RA | No alias | (at3g23330 : 550.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00021884-RA | No alias | (at2g27610 : 613.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00032959-RA | No alias | (at3g46790 : 529.0) Encodes a member of a PCMP (plant... | 0.03 | Orthogroups_2024-Update | |
PSME_00036639-RA | No alias | (at1g11290 : 691.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
PSME_00048581-RA | No alias | (at4g02750 : 590.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00056168-RA | No alias | (at3g61170 : 686.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
Potri.001G066100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.001G243800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.001G322100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.006G164100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Potri.006G245300 | No alias | Function unknown | 0.02 | Orthogroups_2024-Update | |
Potri.012G048800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.013G058900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.015G018700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.018G040100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Pp1s276_42V6 | No alias | F4I10.100; pentatricopeptide (PPR) repeat-containing... | 0.03 | Orthogroups_2024-Update | |
Seita.2G203300.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Seita.3G244400.1 | No alias | RNA editing factor *(MEF32) | 0.06 | Orthogroups_2024-Update | |
Sobic.001G069300.2 | No alias | RNA editing factor *(DEK36) | 0.02 | Orthogroups_2024-Update | |
Sobic.001G347100.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G200500.3 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.003G237100.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.004G266300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.008G041000.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.009G241200.3 | No alias | RNA editing factor *(ECB2/VAC1) | 0.03 | Orthogroups_2024-Update | |
Sobic.010G066900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sopen05g018650 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen07g017190 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
MF | GO:0003848 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity | IEP | Predicted GO |
MF | GO:0003951 | NAD+ kinase activity | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
BP | GO:0006082 | organic acid metabolic process | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006397 | mRNA processing | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
BP | GO:0006575 | cellular modified amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006732 | coenzyme metabolic process | IEP | Predicted GO |
BP | GO:0006733 | oxidoreduction coenzyme metabolic process | IEP | Predicted GO |
BP | GO:0006739 | NADP metabolic process | IEP | Predicted GO |
BP | GO:0006741 | NADP biosynthetic process | IEP | Predicted GO |
BP | GO:0006760 | folic acid-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
BP | GO:0009108 | coenzyme biosynthetic process | IEP | Predicted GO |
BP | GO:0009165 | nucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0009396 | folic acid-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0009987 | cellular process | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
BP | GO:0016567 | protein ubiquitination | IEP | Predicted GO |
MF | GO:0016740 | transferase activity | IEP | Predicted GO |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
MF | GO:0016778 | diphosphotransferase activity | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
BP | GO:0019359 | nicotinamide nucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0019362 | pyridine nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0019363 | pyridine nucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Predicted GO |
BP | GO:0032446 | protein modification by small protein conjugation | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0042398 | cellular modified amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0042558 | pteridine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0042559 | pteridine-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0043436 | oxoacid metabolic process | IEP | Predicted GO |
BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
BP | GO:0044281 | small molecule metabolic process | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
BP | GO:0046496 | nicotinamide nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
BP | GO:0051188 | cofactor biosynthetic process | IEP | Predicted GO |
BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
BP | GO:0072524 | pyridine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0072525 | pyridine-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 681 | 804 |
IPR002885 | Pentatricopeptide_repeat | 408 | 451 |
IPR002885 | Pentatricopeptide_repeat | 507 | 554 |
IPR002885 | Pentatricopeptide_repeat | 205 | 249 |
IPR002885 | Pentatricopeptide_repeat | 173 | 202 |
IPR002885 | Pentatricopeptide_repeat | 68 | 89 |
IPR002885 | Pentatricopeptide_repeat | 581 | 605 |
IPR002885 | Pentatricopeptide_repeat | 279 | 304 |
IPR002885 | Pentatricopeptide_repeat | 648 | 676 |
IPR002885 | Pentatricopeptide_repeat | 307 | 335 |
IPR002885 | Pentatricopeptide_repeat | 380 | 396 |
No external refs found! |