Sopen06g029700

Description : tRNA synthetases class II (D, K and N)

Gene families : OG_42_0002438 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002438_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g029700
Cluster	HCCA clusters: Cluster_166

Target	Alias	Description	ECC score	Gene Family Method
At3g11710	No alias	Lysine--tRNA ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VAG3]	0.03	Orthogroups_2024-Update
Bradi1g15370	No alias	lysyl-tRNA synthetase 1	0.05	Orthogroups_2024-Update
Brara.A03391.1	No alias	EC_6.1 ligase forming carbon-oxygen bond & lysine-tRNA ligase	0.02	Orthogroups_2024-Update
Cre03.g160500	No alias	lysyl-tRNA synthetase 1	0.04	Orthogroups_2024-Update
Mp4g22190.1	No alias	lysine-tRNA ligase	0.05	Orthogroups_2024-Update
Pp1s143_109V6	No alias	lysyl-trna synthetase	0.02	Orthogroups_2024-Update
Seita.9G178100.1	No alias	EC_6.1 ligase forming carbon-oxygen bond & lysine-tRNA ligase	0.03	Orthogroups_2024-Update
Sobic.001G178400.1	No alias	EC_6.1 ligase forming carbon-oxygen bond & lysine-tRNA ligase	0.02	Orthogroups_2024-Update
Solyc06g073330	No alias	Lysine--tRNA ligase (AHRD V3.3 *** K4C952_SOLLC)	0.03	Orthogroups_2024-Update
evm.model.tig00020510.54	No alias	(q6f2u9\|syk_orysa : 425.0) Lysyl-tRNA synthetase (EC...	0.01	Orthogroups_2024-Update
evm.model.tig00020510.55	No alias	(q6f2u9\|syk_orysa : 184.0) Lysyl-tRNA synthetase (EC...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	InterProScan predictions
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004364	aa-tRNA-synt_II	56	176

External Links

No external refs found!

Sopen06g029700

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation