Bradi2g10640

Description : cycling DOF factor 3

Gene families : OG_42_0000027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi2g10640
Cluster	HCCA clusters: Cluster_149

Target	Alias	Description	ECC score	Gene Family Method
A4A49_35213	No alias	dof zinc finger protein dof1.7	0.04	Orthogroups_2024-Update
A4A49_35425	No alias	dof zinc finger protein dof1.8	0.03	Orthogroups_2024-Update
A4A49_38012	No alias	dof zinc finger protein dof5.1	0.05	Orthogroups_2024-Update
Brara.A02779.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Glyma.04G233300	No alias	Dof-type zinc finger DNA-binding family protein	0.04	Orthogroups_2024-Update
Glyma.07G193900	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Orthogroups_2024-Update
Glyma.10G173700	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Glyma.17G081800	No alias	OBF binding protein 4	0.03	Orthogroups_2024-Update
HORVU5Hr1G113190.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
HORVU5Hr1G113220.6	No alias	transcription factor *(DOF)	0.02	Orthogroups_2024-Update
PSME_00040668-RA	No alias	(at5g02460 : 137.0) Dof-type zinc finger DNA-binding...	0.03	Orthogroups_2024-Update
Potri.008G055100	No alias	OBF-binding protein 3	0.02	Orthogroups_2024-Update
Potri.015G009300	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Orthogroups_2024-Update
Pp1s170_42V6	No alias	f-box family protein	0.02	Orthogroups_2024-Update
Pp1s385_53V6	No alias	ascorbate oxidase promoter-binding protein aobp	0.01	Orthogroups_2024-Update
Solyc02g090310	No alias	Dof zinc finger protein (AHRD V3.3 - W9QGW0_9ROSA)	0.03	Orthogroups_2024-Update
Sopen03g040210	No alias	Dof domain, zinc finger	0.01	Orthogroups_2024-Update
Sopen05g032990	No alias	Dof domain, zinc finger	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008324	cation transmembrane transporter activity	IEP	Predicted GO
BP	GO:0009719	response to endogenous stimulus	IEP	Predicted GO
BP	GO:0009725	response to hormone	IEP	Predicted GO
BP	GO:0010033	response to organic substance	IEP	Predicted GO
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015693	magnesium ion transport	IEP	Predicted GO
BP	GO:0019725	cellular homeostasis	IEP	Predicted GO
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Predicted GO
BP	GO:0030001	metal ion transport	IEP	Predicted GO
BP	GO:0042221	response to chemical	IEP	Predicted GO
BP	GO:0042592	homeostatic process	IEP	Predicted GO
BP	GO:0045454	cell redox homeostasis	IEP	Predicted GO
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0065008	regulation of biological quality	IEP	Predicted GO
BP	GO:0070838	divalent metal ion transport	IEP	Predicted GO
BP	GO:0072511	divalent inorganic cation transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	109	163

External Links

No external refs found!

Bradi2g10640

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation