Bradi2g12590

Description : GATA transcription factor 23

Gene families : OG_42_0000071 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi2g12590
Cluster	HCCA clusters: Cluster_160

Target	Alias	Description	ECC score	Gene Family Method
405209	No alias	GATA transcription factor 20	0.03	Orthogroups_2024-Update
A4A49_15410	No alias	gata transcription factor 12	0.02	Orthogroups_2024-Update
At3g54810	No alias	GATA transcription factor [Source:UniProtKB/TrEMBL;Acc:B9DHF1]	0.03	Orthogroups_2024-Update
Brara.C03804.1	No alias	transcription factor *(A/B-GATA)	0.02	Orthogroups_2024-Update
Brara.C04334.1	No alias	transcription factor *(A/B-GATA)	0.02	Orthogroups_2024-Update
Brara.I04178.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
GRMZM2G325850	No alias	GATA type zinc finger transcription factor family protein	0.03	Orthogroups_2024-Update
MA_14038g0010	No alias	(at5g66320 : 119.0) Encodes GATA transcription factor...	0.02	Orthogroups_2024-Update
MA_18616g0010	No alias	(at5g25830 : 192.0) Encodes a member of the GATA factor...	0.03	Orthogroups_2024-Update
PSME_00003833-RA	No alias	(at5g25830 : 159.0) Encodes a member of the GATA factor...	0.05	Orthogroups_2024-Update
PSME_00027447-RA	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
Potri.007G024500	No alias	GATA type zinc finger transcription factor family protein	0.03	Orthogroups_2024-Update
Pp1s241_14V6	No alias	hypothetical protein similar to Arabidopsis thaliana...	0.02	Orthogroups_2024-Update
Pp1s241_7V6	No alias	F26P21.10; zinc finger (GATA type) family protein...	0.02	Orthogroups_2024-Update
Pp1s32_226V6	No alias	hypothetical protein similar to Arabidopsis thaliana...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	InterProScan predictions
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	Predicted GO
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predicted GO
MF	GO:0004650	polygalacturonase activity	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
CC	GO:0005576	extracellular region	IEP	Predicted GO
CC	GO:0005618	cell wall	IEP	Predicted GO
BP	GO:0005975	carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0006073	cellular glucan metabolic process	IEP	Predicted GO
BP	GO:0006284	base-excision repair	IEP	Predicted GO
MF	GO:0008131	primary amine oxidase activity	IEP	Predicted GO
MF	GO:0008146	sulfotransferase activity	IEP	Predicted GO
BP	GO:0008152	metabolic process	IEP	Predicted GO
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	Predicted GO
BP	GO:0009308	amine metabolic process	IEP	Predicted GO
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Predicted GO
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Predicted GO
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Predicted GO
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Predicted GO
MF	GO:0016787	hydrolase activity	IEP	Predicted GO
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predicted GO
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Predicted GO
MF	GO:0016830	carbon-carbon lyase activity	IEP	Predicted GO
MF	GO:0016831	carboxy-lyase activity	IEP	Predicted GO
MF	GO:0019104	DNA N-glycosylase activity	IEP	Predicted GO
MF	GO:0030170	pyridoxal phosphate binding	IEP	Predicted GO
CC	GO:0030312	external encapsulating structure	IEP	Predicted GO
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	Predicted GO
BP	GO:0044042	glucan metabolic process	IEP	Predicted GO
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Predicted GO
MF	GO:0048038	quinone binding	IEP	Predicted GO
CC	GO:0048046	apoplast	IEP	Predicted GO
MF	GO:0070279	vitamin B6 binding	IEP	Predicted GO
BP	GO:0071704	organic substance metabolic process	IEP	Predicted GO
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	21	55

External Links

No external refs found!

Bradi2g12590

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation