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  5. Sopen06g030380

Sopen06g030380


Description : gag-polypeptide of LTR copia-type


Gene families : OG_42_0000748 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000748_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g030380
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Sopen01g036800 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g037970 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen03g016180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g025360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g006220 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g031580 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g020600 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR029472 Copia-like_N 21 67
No external refs found!