Bradi2g12950

Description : chromatin-remodeling protein 11

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi2g12950
Cluster	HCCA clusters: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
A4A49_34289	No alias	iswi chromatin-remodeling complex atpase chr11	0.02	Orthogroups_2024-Update
A4A49_50225	No alias	chromatin structure-remodeling complex protein syd	0.02	Orthogroups_2024-Update
A4A49_56777	No alias	chd3-type chromatin-remodeling factor pickle	0.02	Orthogroups_2024-Update
AC235535.1_FG001	No alias	chromatin-remodeling protein 11	0.04	Orthogroups_2024-Update
At2g13370	No alias	Protein CHROMATIN REMODELING 5...	0.02	Orthogroups_2024-Update
At2g25170	No alias	chromatin remodeling factor CHD3 (PICKLE)...	0.03	Orthogroups_2024-Update
At3g06400	No alias	Chromatin-remodeling complex ATPase...	0.03	Orthogroups_2024-Update
At5g19310	No alias	Probable ATP-dependent DNA helicase CHR23...	0.03	Orthogroups_2024-Update
At5g66750	No alias	ATP-dependent DNA helicase DDM1...	0.02	Orthogroups_2024-Update
Bradi1g78440	No alias	SNF2 domain-containing protein / helicase...	0.02	Orthogroups_2024-Update
Cre16.g647602	No alias	chromatin remodeling 1	0.02	Orthogroups_2024-Update
GRMZM2G010085	No alias	chromatin remodeling factor17	0.03	Orthogroups_2024-Update
GRMZM2G049168	No alias	SNF2 domain-containing protein / helicase...	0.02	Orthogroups_2024-Update
GRMZM2G097289	No alias	Homeotic gene regulator	0.02	Orthogroups_2024-Update
Glyma.04G062400	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.02	Orthogroups_2024-Update
Glyma.06G063400	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.03	Orthogroups_2024-Update
HORVU3Hr1G012850.1	No alias	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.02	Orthogroups_2024-Update
Kfl00590_0040	kfl00590_0040_v1.1	(at2g28290 : 922.0) Encodes a SWI2/SNF2-like protein in...	0.02	Orthogroups_2024-Update
MA_102992g0010	No alias	(q7g8y3\|isw2_orysa : 400.0) Probable chromatin...	0.02	Orthogroups_2024-Update
Mp1g05480.1	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.03	Orthogroups_2024-Update
Mp2g26680.1	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.02	Orthogroups_2024-Update
Mp3g15030.1	No alias	chromatin remodeling factor (Iswi)	0.02	Orthogroups_2024-Update
Potri.007G026700	No alias	chromatin remodeling 1	0.03	Orthogroups_2024-Update
Potri.010G091200	No alias	Homeotic gene regulator	0.04	Orthogroups_2024-Update
Pp1s235_76V6	No alias	chromatin remodeling complex subunit	0.02	Orthogroups_2024-Update
Seita.2G419600.1	No alias	component *(CHR5) of SAGA transcription co-activator...	0.03	Orthogroups_2024-Update
Seita.4G050000.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.03	Orthogroups_2024-Update
Sobic.003G163200.1	No alias	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.02	Orthogroups_2024-Update
Sobic.010G065300.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.03	Orthogroups_2024-Update
Solyc02g068560	No alias	CHD3-type chromatin-remodeling factor PICKLE (AHRD V3.3...	0.03	Orthogroups_2024-Update
Solyc06g065730	No alias	chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
evm.model.tig00000217.24	No alias	(at2g28290 : 140.0) Encodes a SWI2/SNF2-like protein in...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0031491	nucleosome binding	IEA	InterProScan predictions
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043044	ATP-dependent chromatin remodeling	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000776	kinetochore	IEP	Predicted GO
MF	GO:0003684	damaged DNA binding	IEP	Predicted GO
MF	GO:0003872	6-phosphofructokinase activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004386	helicase activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
CC	GO:0005643	nuclear pore	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
CC	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Predicted GO
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Predicted GO
BP	GO:0006405	RNA export from nucleus	IEP	Predicted GO
BP	GO:0006406	mRNA export from nucleus	IEP	Predicted GO
BP	GO:0006732	coenzyme metabolic process	IEP	Predicted GO
BP	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	IEP	Predicted GO
BP	GO:0006839	mitochondrial transport	IEP	Predicted GO
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predicted GO
BP	GO:0006996	organelle organization	IEP	Predicted GO
MF	GO:0008134	transcription factor binding	IEP	Predicted GO
MF	GO:0008443	phosphofructokinase activity	IEP	Predicted GO
BP	GO:0009108	coenzyme biosynthetic process	IEP	Predicted GO
BP	GO:0015931	nucleobase-containing compound transport	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Predicted GO
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	Predicted GO
MF	GO:0017025	TBP-class protein binding	IEP	Predicted GO
BP	GO:0017038	protein import	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
CC	GO:0019008	molybdopterin synthase complex	IEP	Predicted GO
MF	GO:0019200	carbohydrate kinase activity	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
BP	GO:0019720	Mo-molybdopterin cofactor metabolic process	IEP	Predicted GO
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Predicted GO
BP	GO:0034508	centromere complex assembly	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0043545	molybdopterin cofactor metabolic process	IEP	Predicted GO
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0046907	intracellular transport	IEP	Predicted GO
BP	GO:0050657	nucleic acid transport	IEP	Predicted GO
BP	GO:0050658	RNA transport	IEP	Predicted GO
BP	GO:0051028	mRNA transport	IEP	Predicted GO
BP	GO:0051168	nuclear export	IEP	Predicted GO
BP	GO:0051169	nuclear transport	IEP	Predicted GO
BP	GO:0051186	cofactor metabolic process	IEP	Predicted GO
BP	GO:0051188	cofactor biosynthetic process	IEP	Predicted GO
BP	GO:0051189	prosthetic group metabolic process	IEP	Predicted GO
BP	GO:0051236	establishment of RNA localization	IEP	Predicted GO
BP	GO:0051276	chromosome organization	IEP	Predicted GO
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Predicted GO
BP	GO:0051641	cellular localization	IEP	Predicted GO
BP	GO:0051649	establishment of localization in cell	IEP	Predicted GO
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0070585	protein localization to mitochondrion	IEP	Predicted GO
BP	GO:0071806	protein transmembrane transport	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Predicted GO
BP	GO:0090407	organophosphate biosynthetic process	IEP	Predicted GO
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR015194	ISWI_HAND-dom	787	866
IPR001650	Helicase_C	526	638
IPR000330	SNF2_N	236	503
IPR015195	SLIDE	927	1037

External Links

No external refs found!

Bradi2g12950

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation