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  5. Bradi2g13480

Bradi2g13480


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000934 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000934_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g13480
Cluster HCCA clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AC187551.3_FG002 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g28390 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G389645 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
MA_499258g0010 No alias (at1g71060 : 380.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_881199g0010 No alias (at1g77360 : 416.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Potri.010G114700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.2G131400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G082000.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc05g008330 No alias Pentatricopeptide repeat protein (AHRD V3.3 *** D2STE8_GOSHI) 0.02 Orthogroups_2024-Update
Sopen01g040810 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 233 275
IPR002885 Pentatricopeptide_repeat 371 416
IPR002885 Pentatricopeptide_repeat 299 346
IPR002885 Pentatricopeptide_repeat 197 226
IPR033443 PPR_long 418 509
No external refs found!