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  5. Bradi2g15830

Bradi2g15830


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g15830
Cluster HCCA clusters: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
101239 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.E02742.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.G01478.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.H01279.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Brara.H03086.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G019689 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G020008 No alias mitochondrial RNAediting factor 1 0.04 Orthogroups_2024-Update
GRMZM2G031588 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G040947 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
GRMZM2G060337 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G073017 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G073460 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G103078 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G144071 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G163396 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G168378 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G331779 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G430710 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G440349 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update
GRMZM2G456114 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G462625 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G474929 No alias mitochondrial editing factor 21 0.02 Orthogroups_2024-Update
GRMZM5G862936 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.01G159100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Glyma.02G144100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G078800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G129100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G240300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.05G244300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G196400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Glyma.08G034600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.08G172502 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G086600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G118200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G071640.4 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os05g49740 No alias EMB2744, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g07780 No alias pentatricopeptide repeat protein PPR986-12, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g24640 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g30760 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_118886g0010 No alias (at2g22070 : 615.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_141034g0010 No alias (at4g33170 : 601.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00001719-RA No alias (at4g18750 : 701.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00001942-RA No alias (at3g57430 : 689.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00005432-RA No alias (at1g11290 : 677.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00016247-RA No alias (at3g12770 : 627.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00031833-RA No alias (at3g13770 : 501.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00035769-RA No alias (at4g13650 : 702.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00035796-RA No alias (at1g11290 : 732.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00038705-RA No alias (at3g23330 : 523.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00056168-RA No alias (at3g61170 : 686.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00056336-RA No alias (at1g11290 : 707.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00056663-RA No alias (at3g13770 : 545.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00056843-RA No alias (at4g02750 : 457.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
Potri.002G014800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.2G203900.1 No alias RNA editing factor *(OTP87) 0.05 Orthogroups_2024-Update
Seita.5G242100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G293800.1 No alias RNA editing factor *(REME2/PGL1) 0.04 Orthogroups_2024-Update
Seita.8G163400.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.9G477500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G001200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G069300.2 No alias RNA editing factor *(DEK36) 0.02 Orthogroups_2024-Update
Sobic.001G212200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G200500.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G380100.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G217900.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G069100.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G155400.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G189200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G258600.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Solyc01g094850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.02 Orthogroups_2024-Update
Solyc03g007840 No alias Pentatricopeptide repeat-containing protein, putative... 0.02 Orthogroups_2024-Update
Solyc03g051780 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57790.2) 0.04 Orthogroups_2024-Update
Solyc06g084580 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.02 Orthogroups_2024-Update
Solyc09g059580 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.05 Orthogroups_2024-Update
Solyc11g007230 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 548 670
IPR002885 Pentatricopeptide_repeat 273 321
IPR002885 Pentatricopeptide_repeat 375 422
IPR002885 Pentatricopeptide_repeat 176 201
IPR002885 Pentatricopeptide_repeat 515 544
IPR002885 Pentatricopeptide_repeat 449 469
IPR002885 Pentatricopeptide_repeat 145 167
IPR002885 Pentatricopeptide_repeat 347 374
IPR002885 Pentatricopeptide_repeat 49 74
IPR002885 Pentatricopeptide_repeat 80 100
No external refs found!