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  5. Bradi2g20230

Bradi2g20230


Description : Radical SAM superfamily protein


Gene families : OG_42_0002154 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002154_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g20230
Cluster HCCA clusters: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
121095 No alias lipoic acid synthase 1 0.03 Orthogroups_2024-Update
A4A49_25914 No alias lipoyl synthase, chloroplastic 0.02 Orthogroups_2024-Update
GRMZM2G039982 No alias Radical SAM superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G279551 No alias Radical SAM superfamily protein 0.03 Orthogroups_2024-Update
Sopen07g028450 No alias Radical SAM superfamily 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
MF GO:0051536 iron-sulfur cluster binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Predicted GO
MF GO:0005381 iron ion transmembrane transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0006144 purine nucleobase metabolic process IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006826 iron ion transport IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009113 purine nucleobase biosynthetic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0034755 iron ion transmembrane transport IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR031691 LIAS_N 62 98
IPR007197 rSAM 128 288
No external refs found!