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  5. Bradi2g22840

Bradi2g22840


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g22840
Cluster HCCA clusters: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
108652 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
110016 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
114611 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
123298 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
126194 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
At1g16480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein... 0.02 Orthogroups_2024-Update
At4g37170 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.03 Orthogroups_2024-Update
Bradi2g09423 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g61387 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g04890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g20480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g40080 No alias mitochondrial editing factor 19 0.03 Orthogroups_2024-Update
Bradi5g14000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Brara.D01648.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E03135.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G00509.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I01685.1 No alias RNA editing factor *(PGN) 0.03 Orthogroups_2024-Update
Brara.I04209.1 No alias RNA editing factor *(MEF100) 0.04 Orthogroups_2024-Update
GRMZM2G111780 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G078900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G272100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G155800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G028520.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G084530.3 No alias RNA editing factor *(SLO4) 0.04 Orthogroups_2024-Update
HORVU3Hr1G079860.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G063960.3 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G067540.5 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G080660.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G101000.3 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
LOC_Os01g72930 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g13230 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g43430 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g24640 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g24680 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g34720 No alias LOI1, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g29360 No alias pentatricopeptide, putative, expressed 0.05 Orthogroups_2024-Update
MA_10248752g0010 No alias (at3g23330 : 422.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_10426261g0020 No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_136326g0010 No alias (at5g09950 : 662.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_14938g0010 No alias (at2g22070 : 608.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
MA_211508g0010 No alias (at4g18750 : 505.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_22485g0010 No alias (at3g46790 : 552.0) Encodes a member of a PCMP (plant... 0.04 Orthogroups_2024-Update
MA_36655g0010 No alias (at4g39530 : 586.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_658463g0010 No alias (at4g02750 : 623.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_771696g0010 No alias (at1g20230 : 490.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_86894g0010 No alias (at3g12770 : 643.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update
MA_87646g0010 No alias (at3g02330 : 723.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_9360929g0010 No alias (at4g13650 : 669.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_9989604g0010 No alias (at4g18750 : 575.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00007543-RA No alias (at2g22070 : 594.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00007848-RA No alias (at3g03580 : 694.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00018763-RA No alias (at1g11290 : 389.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00028920-RA No alias (at4g33170 : 598.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00051353-RA No alias (at4g13650 : 695.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00055422-RA No alias (at2g13600 : 420.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Potri.002G027800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G164900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.007G068600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.007G068900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.016G065500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G076000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.1G237400.1 No alias Unknown function 0.1 Orthogroups_2024-Update
Seita.2G031700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G091900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G177900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G203900.1 No alias RNA editing factor *(OTP87) 0.04 Orthogroups_2024-Update
Seita.2G293300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G302700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G137300.1 No alias RNA editing factor *(ECB2/VAC1) 0.02 Orthogroups_2024-Update
Seita.4G168900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.4G216600.1 No alias Unknown function 0.12 Orthogroups_2024-Update
Seita.4G218400.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Seita.5G065900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G124400.1 No alias RNA editing factor *(OTP81) 0.07 Orthogroups_2024-Update
Seita.5G326600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G360300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G385400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.6G159500.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Seita.7G164600.1 No alias RNA editing factor *(MEF12) 0.02 Orthogroups_2024-Update
Seita.7G205600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G068200.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Seita.9G151300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G341000.1 No alias RNA editing factor *(MEF25) 0.03 Orthogroups_2024-Update
Seita.9G477500.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.001G033600.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G069300.2 No alias RNA editing factor *(DEK36) 0.02 Orthogroups_2024-Update
Sobic.001G151300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G212200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G347100.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G436600.3 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G084400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G172500.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G240900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G292300.2 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.03 Orthogroups_2024-Update
Sobic.003G119100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G142400.2 No alias RNA editing factor *(PGN) 0.05 Orthogroups_2024-Update
Sobic.003G237100.2 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.003G239000.1 No alias RNA editing factor *(MEF1) 0.04 Orthogroups_2024-Update
Sobic.003G277100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G333200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G336400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G053100.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.004G174800.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G199400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G272600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G290400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G008400.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G210700.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.007G208400.1 No alias RNA editing factor *(REME1) 0.02 Orthogroups_2024-Update
Sobic.008G009000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.008G041000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.008G179000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.009G136200.1 No alias RNA editing factor *(MEF32) 0.05 Orthogroups_2024-Update
Sobic.009G238700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G241200.3 No alias RNA editing factor *(ECB2/VAC1) 0.03 Orthogroups_2024-Update
Sobic.010G066900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.010G067000.1 No alias RNA editing factor *(MEF29) 0.04 Orthogroups_2024-Update
Solyc02g079380 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g051780 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57790.2) 0.02 Orthogroups_2024-Update
Sopen01g036300 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen01g038950 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen01g054250 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen07g003070 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen07g017190 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen07g022420 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g009180 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen11g017250 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g026910 No alias PPR repeat family 0.03 Orthogroups_2024-Update
evm.model.tig00001038.5 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 208 254
IPR002885 Pentatricopeptide_repeat 513 556
IPR002885 Pentatricopeptide_repeat 612 659
IPR002885 Pentatricopeptide_repeat 107 154
IPR032867 DYW_dom 785 908
IPR002885 Pentatricopeptide_repeat 311 341
IPR002885 Pentatricopeptide_repeat 412 442
IPR002885 Pentatricopeptide_repeat 284 303
IPR002885 Pentatricopeptide_repeat 182 205
IPR002885 Pentatricopeptide_repeat 81 103
IPR002885 Pentatricopeptide_repeat 385 410
No external refs found!