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  5. Bradi2g23090

Bradi2g23090


Description : histone H2A 12


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g23090
Cluster HCCA clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G151726 No alias histone H2A 2 0.04 Orthogroups_2024-Update
Glyma.13G333900 No alias histone H2A 12 0.02 Orthogroups_2024-Update
HORVU4Hr1G070250.3 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G011620.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
LOC_Os05g02300 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
MA_169054g0020 No alias (p50567|h2a_chlre : 140.0) Histone H2A - Chlamydomonas... 0.04 Orthogroups_2024-Update
Mp2g00760.1 No alias histone (H2A) 0.03 Orthogroups_2024-Update
PSME_00017670-RA No alias (p35063|h2ax_picab : 188.0) Histone H2AX - Picea abies... 0.03 Orthogroups_2024-Update
PSME_00052764-RA No alias (p35063|h2ax_picab : 225.0) Histone H2AX - Picea abies... 0.04 Orthogroups_2024-Update
Potri.001G415700 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Potri.004G031300 No alias histone H2A 2 0.03 Orthogroups_2024-Update
Potri.005G026500 No alias histone H2A 7 0.04 Orthogroups_2024-Update
Potri.005G040800 No alias gamma histone variant H2AX 0.03 Orthogroups_2024-Update
Potri.013G028800 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Sobic.009G015900.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
BP GO:0032787 monocarboxylic acid metabolic process IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 21 98
IPR032454 Histone_H2A_C 101 134
No external refs found!