1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen06g033330

Sopen06g033330


Description : ABC-2 type transporter


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g033330
Cluster HCCA clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
235359 No alias pleiotropic drug resistance 6 0.02 Orthogroups_2024-Update
441717 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Potri.006G248500 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Pp1s72_306V6 No alias atp-binding cassette 0.02 Orthogroups_2024-Update
Sobic.002G203800.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Sobic.003G216000.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Solyc05g053610 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen05g032120 No alias ABC-2 type transporter 0.03 Orthogroups_2024-Update
evm.model.tig00000057.108 No alias (at3g16340 : 255.0) pleiotropic drug resistance 1... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 169 352
IPR029481 ABC_trans_N 83 143
IPR013525 ABC_2_trans 1151 1363
IPR013525 ABC_2_trans 506 718
IPR003439 ABC_transporter-like 854 1005
IPR013581 PDR_assoc 723 786
No external refs found!