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  5. Bradi2g38453

Bradi2g38453


Description : rna processing factor 2


Gene families : OG_42_0000929 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000929_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g38453
Cluster HCCA clusters: Cluster_208

Target Alias Description ECC score Gene Family Method Actions
Bradi1g14190 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G011160.3 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os08g01640 No alias Rf1, mitochondrial precursor, putative, expressed 0.03 Orthogroups_2024-Update
Seita.7G058000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G204600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G204800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G054200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G027600.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G087900.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 128 160
IPR002885 Pentatricopeptide_repeat 68 96
IPR002885 Pentatricopeptide_repeat 232 273
IPR002885 Pentatricopeptide_repeat 311 350
IPR002885 Pentatricopeptide_repeat 169 217
No external refs found!