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  5. Bradi2g38462

Bradi2g38462


Description : rna processing factor 2


Gene families : OG_42_0000929 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000929_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g38462
Cluster HCCA clusters: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
HORVU1Hr1G011160.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G058700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.005G011000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.007G087900.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 23 74
IPR002885 Pentatricopeptide_repeat 332 358
IPR002885 Pentatricopeptide_repeat 292 325
IPR002885 Pentatricopeptide_repeat 196 226
IPR002885 Pentatricopeptide_repeat 100 149
IPR002885 Pentatricopeptide_repeat 437 486
IPR002885 Pentatricopeptide_repeat 367 416
IPR002885 Pentatricopeptide_repeat 229 276
No external refs found!