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  5. Bradi2g39240

Bradi2g39240


Description : pumilio 1


Gene families : OG_42_0001049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001049_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g39240
Cluster HCCA clusters: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
HORVU1Hr1G004200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G115020.1 No alias Unknown function 0.02 Orthogroups_2024-Update
PSME_00014760-RA No alias (at2g29200 : 721.0) Encodes a member of the Arabidopsis... 0.02 Orthogroups_2024-Update
Seita.5G379000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc04g011580 No alias Pumilio, putative (AHRD V3.3 *** B9SDY2_RICCO) 0.02 Orthogroups_2024-Update
Sopen06g001650 No alias Nucleic acid binding protein NABP 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004560 alpha-L-fucosidase activity IEP Predicted GO
MF GO:0004565 beta-galactosidase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
CC GO:0009341 beta-galactosidase complex IEP Predicted GO
MF GO:0015925 galactosidase activity IEP Predicted GO
MF GO:0015928 fucosidase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR012940 NABP 230 338
IPR012940 NABP 334 550
IPR001313 Pumilio_RNA-bd_rpt 625 655
IPR001313 Pumilio_RNA-bd_rpt 769 801
IPR001313 Pumilio_RNA-bd_rpt 816 845
IPR001313 Pumilio_RNA-bd_rpt 698 730
IPR001313 Pumilio_RNA-bd_rpt 662 693
IPR001313 Pumilio_RNA-bd_rpt 734 762
IPR001313 Pumilio_RNA-bd_rpt 553 586
IPR001313 Pumilio_RNA-bd_rpt 591 620
No external refs found!