Sopen06g033490

Description : Sec63 Brl domain

Gene families : OG_42_0000868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000868_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g033490
Cluster	HCCA clusters: Cluster_122

Target	Alias	Description	ECC score	Gene Family Method
At1g20960	No alias	DExH-box ATP-dependent RNA helicase DExH12...	0.02	Orthogroups_2024-Update
At2g42270	No alias	DExH-box ATP-dependent RNA helicase DExH13...	0.03	Orthogroups_2024-Update
Cre17.g744147	No alias	U5 small nuclear ribonucleoprotein helicase, putative	0.03	Orthogroups_2024-Update
GRMZM2G026991	No alias	U5 small nuclear ribonucleoprotein helicase, putative	0.02	Orthogroups_2024-Update
Glyma.06G202500	No alias	U5 small nuclear ribonucleoprotein helicase	0.02	Orthogroups_2024-Update
Kfl00417_0080	kfl00417_0080_v1.1	(at5g61140 : 2262.0) Encodes a predicted protein with...	0.02	Orthogroups_2024-Update
Pp1s28_172V6	No alias	No description available	0.02	Orthogroups_2024-Update
Solyc06g082100	No alias	U5 small nuclear ribonucleoprotein helicase (AHRD V3.3...	0.06	Orthogroups_2024-Update
evm.model.tig00000865.27	No alias	(at1g20960 : 291.0) embryo defective 1507 (emb1507);...	0.02	Orthogroups_2024-Update
evm.model.tig00000865.28	No alias	(at1g20960 : 1091.0) embryo defective 1507 (emb1507);...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	1358	1526
IPR004179	Sec63-dom	1844	2161
IPR004179	Sec63-dom	1011	1313
IPR001650	Helicase_C	745	887
IPR011545	DEAD/DEAH_box_helicase_dom	511	687

External Links

No external refs found!