Bradi2g40760

Description : DEAD box RNA helicase family protein

Gene families : OG_42_0000814 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000814_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi2g40760
Cluster	HCCA clusters: Cluster_69

Target	Alias	Description	ECC score	Gene Family Method
A4A49_13551	No alias	atp-dependent rna helicase-like protein db10	0.03	Orthogroups_2024-Update
Kfl00173_0040	kfl00173_0040_v1....	(at1g55150 : 686.0) DEA(D/H)-box RNA helicase family...	0.02	Orthogroups_2024-Update
PSME_00040415-RA	No alias	(at3g01540 : 682.0) RNA HELICASE DRH1; DEAD box RNA...	0.02	Orthogroups_2024-Update
Potri.010G152400	No alias	DEAD box RNA helicase family protein	0.02	Orthogroups_2024-Update
Pp1s59_81V6	No alias	rna helicase	0.02	Orthogroups_2024-Update
Seita.8G239700.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Solyc12g035130	No alias	RNA helicase DEAD36	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003729	mRNA binding	IEP	Predicted GO
CC	GO:0005685	U1 snRNP	IEP	Predicted GO
BP	GO:0006376	mRNA splice site selection	IEP	Predicted GO
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predicted GO
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Predicted GO
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predicted GO
CC	GO:0097525	spliceosomal snRNP complex	IEP	Predicted GO
CC	GO:0120114	Sm-like protein family complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	388	497
IPR011545	DEAD/DEAH_box_helicase_dom	182	351

External Links

No external refs found!