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  5. Bradi2g43290

Bradi2g43290


Description : AGAMOUS-like 62


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g43290
Cluster HCCA clusters: Cluster_272

Target Alias Description ECC score Gene Family Method Actions
Bradi2g24940 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Brara.E00310.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.H01136.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I02486.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.K00360.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.20G136700 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
LOC_Os02g45770 No alias OsMADS6 - MADS-box family gene with MIKCc type-box, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g10540 No alias OsMADS13 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
Mp4g12490.1 No alias transcription factor (MADS/AGL) 0.02 Orthogroups_2024-Update
Potri.004G115500 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Seita.6G223600.1 No alias MADS/AGL-type transcription factor 0.01 Orthogroups_2024-Update
Sobic.001G086500.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.02 Orthogroups_2024-Update
Sobic.007G192900.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Solyc01g105800 No alias MADS box transcription factor (AHRD V1 **--... 0.02 Orthogroups_2024-Update
Sopen01g049040 No alias SRF-type transcription factor (DNA-binding and... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP Predicted GO
MF GO:0004834 tryptophan synthase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
CC GO:0030677 ribonuclease P complex IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 20 64
No external refs found!