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  5. Bradi2g45250

Bradi2g45250


Description : mitochondrial RNAediting factor 1


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g45250
Cluster HCCA clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
114142 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
At1g14470 No alias Pentatricopeptide repeat-containing protein At1g14470... 0.03 Orthogroups_2024-Update
At4g14820 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.04 Orthogroups_2024-Update
Bradi1g12697 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g69800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g29450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g41651 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.F02971.1 No alias RNA editing factor *(LPA66) 0.03 Orthogroups_2024-Update
GRMZM2G168170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Orthogroups_2024-Update
Glyma.01G048100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G160400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G236700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G286100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G072100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G029060.1 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os01g74600 No alias vegetative storage protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g58330 No alias expressed protein 0.04 Orthogroups_2024-Update
LOC_Os03g32620 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g06650 No alias tetratricopeptide-like helical, putative, expressed 0.02 Orthogroups_2024-Update
MA_122546g0010 No alias (at3g13770 : 499.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_16339g0010 No alias (at3g57430 : 548.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
MA_177230g0010 No alias (at2g22070 : 585.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_25584g0010 No alias (at4g18750 : 529.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_432641g0020 No alias (at1g20230 : 666.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00001944-RA No alias (at1g11290 : 488.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00018173-RA No alias (at3g23330 : 494.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00033049-RA No alias (at1g11290 : 583.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00047584-RA No alias (at4g33170 : 422.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00049918-RA No alias (at4g18750 : 525.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Potri.017G091600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G076000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.1G191400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.1G205700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.1G215700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.2G302700.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.3G006500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.3G137300.1 No alias RNA editing factor *(ECB2/VAC1) 0.02 Orthogroups_2024-Update
Seita.3G244400.1 No alias RNA editing factor *(MEF32) 0.05 Orthogroups_2024-Update
Seita.4G046900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.5G302500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.7G164600.1 No alias RNA editing factor *(MEF12) 0.04 Orthogroups_2024-Update
Seita.8G075300.1 No alias Unknown function 0.09 Orthogroups_2024-Update
Seita.9G068200.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Seita.9G355700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G514800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G282300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G034400.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.002G084400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G025100.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.004G282000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G008400.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.007G137800.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G187600.1 No alias processivity component *(REV7) of DNA polymerase zeta complex 0.03 Orthogroups_2024-Update
Sobic.007G201400.1 No alias RNA editing factor *(DOT4) 0.04 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 462 585
IPR002885 Pentatricopeptide_repeat 163 189
IPR002885 Pentatricopeptide_repeat 363 387
IPR002885 Pentatricopeptide_repeat 263 283
IPR002885 Pentatricopeptide_repeat 190 214
IPR002885 Pentatricopeptide_repeat 86 115
IPR002885 Pentatricopeptide_repeat 291 336
No external refs found!