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  5. Bradi2g45730

Bradi2g45730


Description : ribosomal protein L12-C


Gene families : OG_42_0003941 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003941_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g45730
Cluster HCCA clusters: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
Brara.B03314.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Brara.F03180.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Brara.F03181.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Brara.I00300.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Cre13.g581650 No alias ribosomal protein L12-A 0.09 Orthogroups_2024-Update
GRMZM2G360021 No alias ribosomal protein L12-C 0.03 Orthogroups_2024-Update
HORVU1Hr1G089760.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.13 Orthogroups_2024-Update
HORVU3Hr1G059810.2 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.13 Orthogroups_2024-Update
Kfl00181_0250 kfl00181_0250_v1.1 (q9tl30|rk12_nepol : 115.0) Chloroplast 50S ribosomal... 0.05 Orthogroups_2024-Update
LOC_Os05g49320 No alias ribosomal protein L7/L12 C-terminal domain containing... 0.03 Orthogroups_2024-Update
Potri.001G346100 No alias ribosomal protein L12-A 0.05 Orthogroups_2024-Update
Pp1s215_82V6 No alias ribosomal protein l12 0.11 Orthogroups_2024-Update
Pp1s242_95V6 No alias ribosomal protein l12 0.06 Orthogroups_2024-Update
Pp1s60_169V6 No alias ribosomal protein l12 0.06 Orthogroups_2024-Update
Pp1s6_183V6 No alias ribosomal protein l12 0.06 Orthogroups_2024-Update
Seita.5G253700.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Sobic.003G246400.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.09 Orthogroups_2024-Update
Solyc02g086730 No alias 50S ribosomal protein L12, chloroplastic (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen02g031490 No alias Ribosomal protein L7/L12 C-terminal domain 0.04 Orthogroups_2024-Update
Sopen02g031500 No alias Ribosomal protein L7/L12 C-terminal domain 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
InterPro domains Description Start Stop
IPR013823 Ribosomal_L7/L12_C 109 175
IPR008932 Ribosomal_L7/L12_oligo 54 98
No external refs found!