Sopen06g034240


Description : PPR repeat family


Gene families : OG_42_0009640 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009640_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g034240
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G304965 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Glyma.08G254300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G277000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G111300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Seita.9G340100.1 No alias RNA editing factor *(MEF13) 0.03 Orthogroups_2024-Update
Solyc06g082880 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 219 267
IPR002885 Pentatricopeptide_repeat 524 570
IPR002885 Pentatricopeptide_repeat 422 469
IPR002885 Pentatricopeptide_repeat 119 165
IPR002885 Pentatricopeptide_repeat 623 671
IPR002885 Pentatricopeptide_repeat 497 521
IPR002885 Pentatricopeptide_repeat 62 85
IPR002885 Pentatricopeptide_repeat 324 350
IPR002885 Pentatricopeptide_repeat 90 118
IPR002885 Pentatricopeptide_repeat 698 722
IPR002885 Pentatricopeptide_repeat 396 419
No external refs found!