Description : chloroplast 30S ribosomal protein S20, putative
Gene families : OG_42_0007166 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007166_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brachypodium release: Bradi2g46520 | |
Cluster | HCCA clusters: Cluster_160 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_18338 | No alias | 30s ribosomal protein s20, chloroplastic | 0.03 | Orthogroups_2024-Update | |
Brara.A03158.1 | No alias | component *(bS20c) of small plastid ribosomal-subunit proteome | 0.05 | Orthogroups_2024-Update | |
Brara.C03561.1 | No alias | component *(bS20c) of small plastid ribosomal-subunit proteome | 0.08 | Orthogroups_2024-Update | |
Brara.E02621.1 | No alias | component *(bS20c) of small plastid ribosomal-subunit proteome | 0.09 | Orthogroups_2024-Update | |
Cre12.g494750 | No alias | chloroplast 30S ribosomal protein S20, putative | 0.08 | Orthogroups_2024-Update | |
GRMZM2G163988 | No alias | chloroplast 30S ribosomal protein S20, putative | 0.04 | Orthogroups_2024-Update | |
Glyma.06G236200 | No alias | chloroplast 30S ribosomal protein S20, putative | 0.02 | Orthogroups_2024-Update | |
Glyma.12G162300 | No alias | chloroplast 30S ribosomal protein S20, putative | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G062490.1 | No alias | component *(bS20c) of small plastid ribosomal-subunit proteome | 0.22 | Orthogroups_2024-Update | |
Kfl00093_0180 | kfl00093_0180_v1.1 | (at3g15190 : 99.8) chloroplast 30S ribosomal protein... | 0.02 | Orthogroups_2024-Update | |
Potri.001G396600 | No alias | chloroplast 30S ribosomal protein S20, putative | 0.07 | Orthogroups_2024-Update | |
Pp1s323_3V6 | No alias | 30s ribosomal protein | 0.09 | Orthogroups_2024-Update | |
Seita.5G270200.1 | No alias | component *(bS20c) of small plastid ribosomal-subunit proteome | 0.06 | Orthogroups_2024-Update | |
Sobic.003G256200.1 | No alias | component *(bS20c) of small plastid ribosomal-subunit proteome | 0.05 | Orthogroups_2024-Update | |
Solyc07g062870 | No alias | 30S ribosomal protein S20 (AHRD V3.3 *** A0A060IGE4_PANGI) | 0.03 | Orthogroups_2024-Update | |
Sopen07g031070 | No alias | Ribosomal protein S20 | 0.11 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | InterProScan predictions |
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005622 | intracellular | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006450 | regulation of translational fidelity | IEP | Predicted GO |
MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
MF | GO:0008171 | O-methyltransferase activity | IEP | Predicted GO |
CC | GO:0009507 | chloroplast | IEP | Predicted GO |
CC | GO:0009536 | plastid | IEP | Predicted GO |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Predicted GO |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
CC | GO:0019898 | extrinsic component of membrane | IEP | Predicted GO |
CC | GO:1990204 | oxidoreductase complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002583 | Ribosomal_S20 | 79 | 165 |
No external refs found! |