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  5. Bradi2g53580

Bradi2g53580


Description : expansin A8


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g53580
Cluster HCCA clusters: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
230202 No alias expansin A2 0.03 Orthogroups_2024-Update
Bradi2g22290 No alias expansin A1 0.04 Orthogroups_2024-Update
Bradi3g59460 No alias expansin A1 0.04 Orthogroups_2024-Update
Brara.B01279.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.C02851.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.G02887.1 No alias alpha-class expansin 0.05 Orthogroups_2024-Update
GRMZM2G450546 No alias expansin 11 0.03 Orthogroups_2024-Update
Glyma.06G021700 No alias expansin 11 0.03 Orthogroups_2024-Update
Kfl00557_g9 kfl00557_g9_v1.1 (at1g12560 : 146.0) Member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
LOC_Os02g51040 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g15840 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_10377235g0010 No alias (at2g40610 : 412.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
MA_30127g0010 No alias (at2g40610 : 411.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
Mp1g22730.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Mp1g26350.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Mp3g09760.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
PSME_00018430-RA No alias (at2g40610 : 404.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Potri.001G240900 No alias expansin A4 0.03 Orthogroups_2024-Update
Seita.5G363100.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Sobic.001G033300.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.003G128800.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Sobic.003G338801.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Sobic.004G238801.1 No alias alpha-class expansin 0.05 Orthogroups_2024-Update
Solyc05g052250 No alias Expansin (AHRD V3.3 *** G4XZW3_9GENT) 0.03 Orthogroups_2024-Update
Solyc08g080060 No alias Expansin-like protein (AHRD V3.3 *** Q0WT83_ARATH) 0.03 Orthogroups_2024-Update
Sopen06g017810 No alias Rare lipoprotein A (RlpA)-like double-psi beta-barrel 0.03 Orthogroups_2024-Update
Sopen10g035900 No alias Pollen allergen 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 64 150
IPR007117 Expansin_CBD 161 238
No external refs found!