Bradi2g54210

Description : Ribosomal protein S12/S23 family protein

Gene families : OG_42_0001537 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001537_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi2g54210
Cluster	HCCA clusters: Cluster_132

Target	Alias	Description	ECC score	Gene Family Method
145246	No alias	Ribosomal protein S12/S23 family protein	0.19	Orthogroups_2024-Update
A4A49_33378	No alias	40s ribosomal protein s23	0.05	Orthogroups_2024-Update
A4A49_59751	No alias	40s ribosomal protein s23	0.12	Orthogroups_2024-Update
AC225147.4_FG002	No alias	Ribosomal protein S12/S23 family protein	0.03	Orthogroups_2024-Update
At3g09680	No alias	40S ribosomal protein S23-1...	0.04	Orthogroups_2024-Update
Brara.A03520.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Brara.B00072.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.17	Orthogroups_2024-Update
Brara.C00091.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.2	Orthogroups_2024-Update
Brara.C03262.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Brara.J02847.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.16	Orthogroups_2024-Update
Cre12.g504200	No alias	Ribosomal protein S12/S23 family protein	0.15	Orthogroups_2024-Update
GRMZM2G140609	No alias	Ribosomal protein S12/S23 family protein	0.05	Orthogroups_2024-Update
Glyma.03G178000	No alias	Ribosomal protein S12/S23 family protein	0.04	Orthogroups_2024-Update
Glyma.10G049400	No alias	Ribosomal protein S12/S23 family protein	0.14	Orthogroups_2024-Update
Glyma.13G137100	No alias	Ribosomal protein S12/S23 family protein	0.09	Orthogroups_2024-Update
Glyma.19G178800	No alias	Ribosomal protein S12/S23 family protein	0.1	Orthogroups_2024-Update
HORVU1Hr1G071570.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.11	Orthogroups_2024-Update
HORVU3Hr1G087380.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
HORVU5Hr1G066080.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
HORVU5Hr1G112390.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Kfl00077_0130	kfl00077_0130_v1.1	(p46297\|rs23_fraan : 274.0) 40S ribosomal protein S23...	0.08	Orthogroups_2024-Update
MA_10436470g0020	No alias	(p46297\|rs23_fraan : 282.0) 40S ribosomal protein S23...	0.06	Orthogroups_2024-Update
Mp2g08680.1	No alias	component RPS23 of SSU proteome	0.06	Orthogroups_2024-Update
PSME_00017761-RA	No alias	(p46297\|rs23_fraan : 278.0) 40S ribosomal protein S23...	0.08	Orthogroups_2024-Update
PSME_00017762-RA	No alias	(p46297\|rs23_fraan : 282.0) 40S ribosomal protein S23...	0.06	Orthogroups_2024-Update
Potri.006G131500	No alias	Ribosomal protein S12/S23 family protein	0.05	Orthogroups_2024-Update
Potri.008G044400	No alias	Ribosomal protein S12/S23 family protein	0.1	Orthogroups_2024-Update
Pp1s135_33V6	No alias	40s ribosomal protein s23	0.15	Orthogroups_2024-Update
Pp1s264_73V6	No alias	40s ribosomal protein s23	0.06	Orthogroups_2024-Update
Pp1s287_20V6	No alias	40s ribosomal protein s23	0.12	Orthogroups_2024-Update
Pp1s372_2V6	No alias	40s ribosomal protein s23	0.05	Orthogroups_2024-Update
Pp1s61_268V6	No alias	40s ribosomal protein s23	0.14	Orthogroups_2024-Update
Seita.3G213400.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.25	Orthogroups_2024-Update
Seita.5G371300.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.28	Orthogroups_2024-Update
Seita.9G035900.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Sobic.001G036900.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Sobic.003G346600.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.26	Orthogroups_2024-Update
Sobic.009G166500.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.26	Orthogroups_2024-Update
Solyc09g007350	No alias	Ribosomal protein S12 (AHRD V3.3 *** A0A059LPB2_9CHLO)	0.21	Orthogroups_2024-Update
Solyc10g084310	No alias	Ribosomal protein S12 (AHRD V3.3 *** A0A059LPB2_9CHLO)	0.04	Orthogroups_2024-Update
Solyc10g086020	No alias	interactor of constitutive active ROPs 3	0.21	Orthogroups_2024-Update
Sopen09g002250	No alias	Ribosomal protein S12/S23	0.25	Orthogroups_2024-Update
Sopen10g033750	No alias	Ribosomal protein S12/S23	0.1	Orthogroups_2024-Update
Sopen10g035390	No alias	Ribosomal protein S12/S23	0.19	Orthogroups_2024-Update
evm.model.contig_4434.4	No alias	(p46297\|rs23_fraan : 218.0) 40S ribosomal protein S23...	0.23	Orthogroups_2024-Update
evm.model.tig00001264.27	No alias	(at5g02960 : 160.0) Ribosomal protein S12/S23 family...	0.1	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004399	histidinol dehydrogenase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
BP	GO:0006177	GMP biosynthetic process	IEP	Predicted GO
BP	GO:0006353	DNA-templated transcription, termination	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006547	histidine metabolic process	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0009119	ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0009163	nucleoside biosynthetic process	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
MF	GO:0031072	heat shock protein binding	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0042278	purine nucleoside metabolic process	IEP	Predicted GO
BP	GO:0042451	purine nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0046037	GMP metabolic process	IEP	Predicted GO
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0046129	purine ribonucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0052803	imidazole-containing compound metabolic process	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Predicted GO
BP	GO:1901070	guanosine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006032	Ribosomal_S12/S23	31	141

External Links

No external refs found!

Bradi2g54210

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation