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  5. Sopen06g035440

Sopen06g035440


Description : Photosystem II reaction centre W protein (PsbW)


Gene families : OG_42_0003970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003970_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g035440
Cluster HCCA clusters: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
A4A49_05181 No alias photosystem ii reaction center w protein, chloroplastic 0.07 Orthogroups_2024-Update
A4A49_19163 No alias photosystem ii reaction center w protein, chloroplastic 0.07 Orthogroups_2024-Update
Bradi2g20380 No alias photosystem II reaction center W 0.06 Orthogroups_2024-Update
Bradi2g51480 No alias photosystem II reaction center W 0.02 Orthogroups_2024-Update
Brara.D01828.1 No alias component *(PsbW) of PS-II complex 0.1 Orthogroups_2024-Update
Brara.E01277.1 No alias component *(PsbW) of PS-II complex 0.03 Orthogroups_2024-Update
Glyma.02G141700 No alias photosystem II reaction center W 0.1 Orthogroups_2024-Update
Glyma.03G159100 No alias photosystem II reaction center W 0.05 Orthogroups_2024-Update
Glyma.10G032200 No alias photosystem II reaction center W 0.04 Orthogroups_2024-Update
Glyma.19G161400 No alias photosystem II reaction center W 0.03 Orthogroups_2024-Update
HORVU1Hr1G078140.4 No alias component *(PsbW) of PS-II complex 0.04 Orthogroups_2024-Update
HORVU3Hr1G075870.1 No alias component *(PsbW) of PS-II complex 0.03 Orthogroups_2024-Update
LOC_Os01g56680 No alias photosystem II reaction center W protein, chloroplast... 0.04 Orthogroups_2024-Update
LOC_Os05g43310 No alias photosystem II reaction center W protein, chloroplast... 0.02 Orthogroups_2024-Update
Mp5g14190.1 No alias component PsbW of PS-II complex 0.08 Orthogroups_2024-Update
Pp1s185_110V6 No alias photosystem ii reaction center w chloroplast 0.11 Orthogroups_2024-Update
Pp1s185_111V6 No alias photosystem ii reaction center w chloroplast 0.06 Orthogroups_2024-Update
Seita.3G184900.1 No alias component *(PsbW) of PS-II complex 0.08 Orthogroups_2024-Update
Seita.5G336700.1 No alias component *(PsbW) of PS-II complex 0.09 Orthogroups_2024-Update
Sobic.003G313000.1 No alias component *(PsbW) of PS-II complex 0.09 Orthogroups_2024-Update
Sobic.009G191300.1 No alias component *(PsbW) of PS-II complex 0.04 Orthogroups_2024-Update
Solyc06g084050 No alias LOW QUALITY:isochorismate synthase 2 (AHRD V3.3 --* AT1G18870.2) 0.09 Orthogroups_2024-Update
Solyc09g065910 No alias photosystem II reaction center W (AHRD V3.3 *** AT2G30570.1) 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEA InterProScan predictions
CC GO:0009523 photosystem II IEA InterProScan predictions
BP GO:0015979 photosynthesis IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR009806 PSII_PsbW_class2 4 128
No external refs found!