Sopen06g035480

Description : Core histone H2A/H2B/H3/H4

Gene families : OG_42_0000970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000970_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g035480
Cluster	HCCA clusters: Cluster_44

Target	Alias	Description	ECC score	Gene Family Method
At3g54560	No alias	Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]	0.04	Orthogroups_2024-Update
At4g13570	No alias	Histone H2A [Source:UniProtKB/TrEMBL;Acc:F4JT33]	0.03	Orthogroups_2024-Update
Brara.D00458.1	No alias	histone *(H2A)	0.08	Orthogroups_2024-Update
Brara.G01636.1	No alias	histone *(H2A)	0.03	Orthogroups_2024-Update
Brara.I03717.1	No alias	histone *(H2A)	0.06	Orthogroups_2024-Update
Cre13.g567700	No alias	histone H2A protein 9	0.02	Orthogroups_2024-Update
Glyma.02G143200	No alias	histone H2A 11	0.03	Orthogroups_2024-Update
Glyma.03G158100	No alias	histone H2A 11	0.04	Orthogroups_2024-Update
Glyma.10G031200	No alias	histone H2A 11	0.04	Orthogroups_2024-Update
Pp1s376_22V6	No alias	histone 2	0.03	Orthogroups_2024-Update
Seita.9G531300.1	No alias	histone *(H2A)	0.07	Orthogroups_2024-Update
Solyc06g084090	No alias	Histone H2A (AHRD V3.3 *** K4CAR4_SOLLC)	0.13	Orthogroups_2024-Update
evm.model.contig_2022.11	No alias	(q84mp7\|h2av3_orysa : 175.0) Probable histone H2A...	0.03	Orthogroups_2024-Update
evm.model.tig00021108.27	No alias	(q8h7y8\|h2av1_orysa : 197.0) Probable histone H2A...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	16	106
IPR032454	Histone_H2A_C	107	136

External Links

No external refs found!