Bradi2g56870

Description : chromatin remodeling factor CHD3 (PICKLE)

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi2g56870
Cluster	HCCA clusters: Cluster_116

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g35740	No alias	chromatin-remodeling protein 11	0.01	Orthogroups_2024-Update
Brara.B00782.1	No alias	Unknown function	0.05	Orthogroups_2024-Update
Glyma.01G073400	No alias	SNF2 domain-containing protein / helicase...	0.04	Orthogroups_2024-Update
Glyma.05G131500	No alias	chromatin remodeling 4	0.01	Orthogroups_2024-Update
HORVU4Hr1G008870.18	No alias	chromatin remodeling factor *(DDM1)	0.03	Orthogroups_2024-Update
LOC_Os05g05230	No alias	expressed protein	0.03	Orthogroups_2024-Update
LOC_Os09g27060	No alias	SNF2 family N-terminal domain containing protein, expressed	0.01	Orthogroups_2024-Update
PSME_00001593-RA	No alias	(at2g13370 : 1311.0) chromatin remodeling 5 (CHR5);...	0.01	Orthogroups_2024-Update
PSME_00006567-RA	No alias	(at5g44800 : 1157.0) chromatin remodeling 4 (CHR4);...	0.01	Orthogroups_2024-Update
Pp1s291_20V6	No alias	chromodomain-helicase-dna-binding protein	0.02	Orthogroups_2024-Update
Solyc02g068560	No alias	CHD3-type chromatin-remodeling factor PICKLE (AHRD V3.3...	0.01	Orthogroups_2024-Update
Sopen02g030080	No alias	SNF2 family N-terminal domain	0.01	Orthogroups_2024-Update
Sopen12g034530	No alias	SNF2 family N-terminal domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0043565	sequence-specific DNA binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	531	808

External Links

No external refs found!