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  5. Bradi2g57697

Bradi2g57697


Description : cyclic nucleotide-gated channel 18


Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g57697
Cluster HCCA clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
At5g14870 No alias Cyclic nucleotide-gated ion channel 18... 0.03 Orthogroups_2024-Update
Brara.E02422.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.03 Orthogroups_2024-Update
Brara.K00815.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.02 Orthogroups_2024-Update
GRMZM2G023534 No alias cyclic nucleotide-gated channel 14 0.03 Orthogroups_2024-Update
Glyma.06G184000 No alias cyclic nucleotide-gated channel 16 0.03 Orthogroups_2024-Update
Glyma.16G025400 No alias cyclic nucleotide-gated channel 13 0.02 Orthogroups_2024-Update
Glyma.19G255500 No alias cyclic nucleotide gated channel 1 0.02 Orthogroups_2024-Update
HORVU1Hr1G066050.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.02 Orthogroups_2024-Update
MA_167620g0010 No alias (at5g15410 : 804.0) 'defense, no death' gene (DND1)... 0.02 Orthogroups_2024-Update
Seita.8G055000.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.03 Orthogroups_2024-Update
Solyc05g050350 No alias Cyclic nucleotide-gated channel (AHRD V3.3 *** A0A0K9PRG4_ZOSMR) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA InterProScan predictions
BP GO:0006811 ion transport IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009539 photosystem II reaction center IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
CC GO:0031360 intrinsic component of thylakoid membrane IEP Predicted GO
CC GO:0031361 integral component of thylakoid membrane IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 14 234
IPR000595 cNMP-bd_dom 330 419
No external refs found!