Sopen06g035890

Description : Zinc-ribbon

Gene families : OG_42_0001040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001040_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g035890
Cluster	HCCA clusters: Cluster_238

Target	Alias	Description	ECC score	Gene Family Method	Actions
Brara.B03627.1	No alias	E3 ubiquitin ligase *(CHY)	0.04	Orthogroups_2024-Update
LOC_Os01g52110	No alias	RING finger and CHY zinc finger domain-containing...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR039512	RCHY1_zinc-ribbon	215	271
IPR001841	Znf_RING	166	209
IPR008913	Znf_CHY	32	112

External Links

No external refs found!